Computer Skills for Biological Research: Introduction to GNU/Linux and Bash Scripting

Feb 9-13, 2026

Mathias Currat

Dr Jose Manuel Nunes, UNIGE
Dr Mathias Currat, UNIGE

• Dr Mathias Currat, UNIGE
• Dr Jose Manuel Nunes, UNIGE

This course introduces essential computational tools and techniques for early-career researchers in biology, building upon basic computer skills typically acquired at the undergraduate level. It focuses on the GNU/Linux command line (BASH) and scripting tools, which provide powerful and efficient means for data manipulation, automating file formatting and computations, and leveraging high-performance computing clusters. The course is designed for both beginners and more experienced users, with a progressive increase in complexity over four days. While prior experience in computing or programming is helpful, it is not required.

Part 1 covers the fundamentals of shell commands for handling text files, regular expressions, pipes, and simple scripts.
Part 2 focuses on writing more advanced scripts and performing hands-on exercises using a computing cluster.

By the end of the course, participants are expected to:
1/ Work confidently in shell environments and write shell scripts;
2/ Manipulate data files and perform file format conversions;
3/ Read and write basic regular expressions;
4/ Use GNU/Linux-based computing clusters.

The course provides essential theoretical foundations for each topic but emphasizes hands-on practice through numerous applied exercises. The training is designed to develop practical autonomy in handling and analyzing data, equipping participants with skills directly relevant to research in biology.

THIS ACTIVITY IS FULL - waiting list: 3 people (update 16.12.25)

UNIGE, Sciences II, room 4-457

When?
Feb 9-13, 2026
Starts at 9:15 AM on Monday 9

Where?
University of Geneva - Sc.II, 4th floor, room 4-457

Questions?
@: ecologie-evolution(@)cuso.ch

Travel
PhD students of the CUSO DPEE are eligible for the reimbursement of incurred travel expenses by train (half-fare card, 2nd class). Claims can be done online via MyCUSO when the activity is over.

Fees
CUSO members: Free

Important! >> Late cancellations (after 01.01.2025) or 'no-show': 100 CHF administrative fee

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