Detailed information about the course

[ Back ]
Title

Lausanne Genomics Days 2020

Dates

10-11 February 2020

Organizer(s)

Dr. Julien Marquis, UNIL
Prof. Julia Santiago Cuellar, UNIL
Prof. Philipp Engel, UNIL
Prof. Tanja Schwander, UNIL
Prof. Sven Bergmann, UNIL

Speakers

Prof. Martin Jinek
Dr. Robertas Ursache (Prof. Niko Geldner lab)
Dr. Lotte Spel (Prof. Fabio Martinon lab)
Prof. Detlev Arendt
Prof. Anne Roulin
Prof. Stefan Ameres
Dr. Flora Brozzi (Prof. Romano Regazzi lab)
Dr. Rodrigo Siqueira Reis (Prof. Yves Poirier lab)
Lina Worpenberg (Prof. Jean Yves Roignant lab)
Prof. Colin Hill
Dr. Kirsten Ellegaard (Prof. Philipp Engel lab)
Paddy Gibson (Prof. Jan-Willem Veening lab)
Prof. Guillem Salazar Guiral
Prof. Tamir Tuller
Dr. Anneke Brümmer (Prof. Sven Bergman group)
Dr. Cedric Gobet (Prof. Felix Naef lab)
Prof. David Gatfield

Jelisaveta Djordjevic
Tom Kay

 

 

Description
Program


MONDAY FEBRUARY 10, 1020
9:30-10:00 Welcome and coffee in the Génopode Hall

 

10:00-11:45 Translation regulation session
Session's chaiperson
Prof. Sven Bergmann - UNIL: Department of Computational Biology

Keynote presentation speaker
10:00 Prof. Tamir Tuller - Tel Aviv University, Israel
Computational deciphering and modelling of novel gene expression rules encoded in the mRNA

Local speakers
10:45 Dr. Anneke Brümmer (Prof. Sven Bergman group) - UNIL: Department of Computational Biology
LincRNA sequences are biased to counteract their translation
11:00 Dr. Cédric Gobet (Prof. Felix Naef lab) - EPFL
Modeling ribosome dwell times and relationships with aminoacyl-tRNAs in mouse liver
11:25 Prof. David Gatfield - UNIL: Center for Integrative Genomics
Transcriptome-wide sites of collided ribosomes reveal sequence determinants of translational pausing

11:45-13:00 Lunch in the Génopode hall

 

13:00-14:45 RNA processing session
Session's chaiperson
Dr. Julien Marquis - UNIL: Genomics Facility

Keynote presentation speaker
13:00 Prof. Stefan Ameres - Institute of Molecular Biotechnology, Austria
SLAMseq – Dissecting gene regulatory mechanisms by time-resolved RNA sequencing

Local speakers
13:45 Dr. Flora Brozzi (Prof. Romano Regazzi lab) - Department of Fundamental Neurosciences (DNF)
RNA-tagging to unveil beta-cell/immune cell crosstalk in diabetes pathogenesis
14:05 Dr. Rodrigo Siqueira Reis (Prof. Yves Poirier lab) - UNIL: Department of Plant Molecular Biology
Complex mRNA-antisense lncRNA interaction revealed by SHAPE-MaP
14:25 Lina Worpenberg (Prof. Jean Yves Roignant lab) - UNIL: Center for Integrative Genomics
Shaping the nervous system by m6A mRNA modification

14:45-15:15 Coffee break in the Génopode hall

 

15:15-16:55 Gene editing session
Session's chaiperson
Prof. Julia Santiago Cuellar - UNIL: Department of Plant Molecular Biology

Keynote presentation speaker
15:15 Prof. Martin Jinek - University of Zurich, Switzerland
Molecular mechanisms of genome editors

Local speakers
15:55 Dr. Robertas Ursache (Prof. Niko Geldner lab) - UNIL: Department of Plant Molecular Biology
CRISPR and the new age of genetic analysis in Arabidopsis
16:20 Dr. Lotte Spel (Prof. Fabio Martinon lab) - UNIL: Department of Biochemistry
A functional genetics approach to dissect inflammasome activation

16:45 Apéro in the Génopode hall

 

 

TUESDAY FEBRUARY 11, 2020
09:30-10:00 Welcome and coffee in the Génopode hall


10:00-11:45 Microbiome analysis session
Session's chaiperson
Prof. Philipp Engel - UNIL: Department of Fundamental microbiology

Keynote presentation speaker
10:00 Prof. Colin Hill - University College Cork, Ireland
A voyage through the gut virome

Local speakers
10:45 Dr. Kirsten Ellegaard (Prof. Philipp Engel lab) - UNIL: Department of Fundamental microbiology
Getting quantitative on the Microbiome: vast differences in strain-level diversity among host-associated bacterial communities
11:05 Paddy Gibson (Prof. Jan-Willem Veening lab) - UNIL: Department of Fundamental microbiology
Deciphering the origins of amoxicillin resistance in Streptococcus pneumoniae through experimental evolution and NGS
11:25 Prof. Guillem Salazar Guiral - ETH: Microbiology
Disentangling the effects of gene expression changes and community turnover in the global ocean

11:45-13:30 Lunch in the Génopode hall

 

13:30-15:15 Evolution Session
Session's chaiperson
Prof. Tanja Schwander - UNIL: Department of Ecology and Evolution

Local speakers
13:30 Prof. Anne Roulin - UZH: Department of Plant and Microbial Biology
Transposable element evolution in small genomes What can we learn from population genomics in B. distachyon?
13:50 Jelisaveta Djordjevic - UNIL: Department of Ecology and Evolution
Sexual conflict and the ontogeny of sex-biased gene expression in stick insects
14:10 Tom Kay - UNIL: Department of Ecology and Evolution
Position in the social network is a central driver of behavior and gene expression in ants

Keynote presentation speaker
14:30 Prof Detlev Arendt - EMBL Heidelberg
Evolution of neurons and of the nervous system

Location

University of Lausanne, Génopode, Auditorium C

Map

Map

Information
Expenses

Reimbursements:

Reimbursements for CUSO MPS Students: Train ticket, 2°class, half-fare from your institution to the place of the activity.
NO reimbursement for your meal expenses.



Reimbursement form attached with original tickets has to be sent to the MPS coordinator Zoia Debora at University of Lausanne, Department of Molecular Plant Biology, Biophore - quartier UNIL-Sorge, 1015 Lausanne.
For any question concerning reimbursement please contact the CUSO MPS coordinator Debora Zoia.

Registration

Deadline for Registration: 01 February 2020

 

Please register through the CUSO StarOmics Webpage.

Places

150

Deadline for registration
Joint activity joint
short-url short URL

short-url URL onepage