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Title

BEFRI Genomics Day 2018

Dates

22 June 2018

Lang EN Workshop language is English
Responsable de l'activité

Laurent Falquet

Organizer(s)

Dr. Laurent Falquet, UNIFR

Speakers

Dr. Laurent Falquet, UniFr
Marco Galimberti, PhD student, UniFr
Prof. David Gfeller, UniL
Jennifer Kaldun, PhD student, UniFr
Dr. Irène Keller, UniBe
Dr. Jenna Kelly, UniBe
Prof. Tosso Leeb, UniBe
Dr. Laurent Mène-Saffrané, UniFr
Dr. Deborah Moine, PacBio & Witec AG
Dr. Laurent Poirel, UniFr
Carlos Pulido Quetglas, PhD student, UniBe
Prof. Peter Redder, Toulouse, FR
Dr. Rudi Schläfli, Sales Executive Switzerland/Austria

Description

The field of Genomics continues to grow in importance and new techniques emerge regularly both to produce data and to analyze data. We will invite several local and foreign speakers to present their methods and results. Selected PhD students will present shortly their projects. All CUSO PhD students will be invited to have lunch with the speakers.

Program

Download the flyer


More informations: www.unifr.ch

9:15 Welcome address

9:20 Dr. Laurent Mène-Saffrané, UniFr
«Mapping multiple mutations directly from Arabidopsis unbackcrossed mutants»

9:50 Selected PhD student presentations
Jennifer Kaldun, UniFr: «Generation of conditional knockout mutants of the Drosophila melanogaster Dopamine receptors»
Carlos Pulido Quetglas, UniBe: «Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion»
Marco Galimberti, UniFr: «Detecting divergent and balancing selection from linked sites»

10:20 coffee break

10:50 Prof. David Gfeller, UniL
«Single-cell transcriptome analysis reveals a heterogeneous and dynamic landscape of tumor infiltrating CD8 T cells»

11:20 Dr. Jenna Kelly, UniBe
«Single Cell Characterization of Host-Virus Interactions Within the Respiratory Epithelium»

11:50 Dr. Rudi Schläfli, Sales Executive Switzerland/Austria
«The 10x Genomics Chromium™ System: Biology in HD»

12:05 Dr. Deborah Moine, PacBio & Witec AG
«Introduction to SMRT Sequencing for bacterial genomes assembly and isoform sequence (Iso-Seq®) analysis»

12:20 Lunch break (StarOmics students can eat with the speakers)

13:30 Dr. Laurent Poirel, UniFr
«Prospective screening of acquired resistance to polymyxin antibiotics in Escherichia coli in the human population; identification of resistance mechanisms by use of next-generation sequencing»

14:00 Prof. Peter Redder, Toulouse, FR
«Transcriptome-wide mapping of ribonuclease cleavage sites and impacts on RNA degradation»

14:30 coffee break

15:00 Prof. Tosso Leeb, UniBe & Dr. Irene Keller, UniBe
«NGS and Bioinformatics resources in Bern»

15:30 Dr. Laurent Falquet, UniFr
«The Bioinformatics core facility at UniFr»

16:00 Farewell

Location

University of Fribourg, Auditorium O.110, Plant Biology Building

Map

Map

Information
Expenses

Reimbursements for CUSO StarOmics PhD Students
Train ticket, 2°class, half-fare from your institution to the place of the activity.
NEW from 2018: NO reimbursement for your meal expenses

CUSO StarOmics Students:
Reimbursement form attached with original tickets has to be sent to the StarOmics coordinator Corinne Dentan at University of Lausanne, CIG, Génopode, 1015 Lausanne.

Registration

By June 1st

Places

80

Deadline for registration 30.06.2018
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