Detailed information about the course
Title | [REPORT À 2021] The Search for Selection |
Dates | Postponed to summer 2021 |
Organizer(s) | Prof. Jérôme Goudet, UNIL |
Speakers | Prof. Bruce Walsh, University of Arizona, US |
Description | A vast number of approaches have been suggested in the search for selection, ranging from genomicbased signatures of recent or ongoing selection, tests based on either excessive amounts or nonrandom patterns of divergence (in both fossil sequences and with functional genomics data) and the more classical LandeArnold fitness estimates (direct association of phenotypic values with fitness estimates) and their modern extensions. This workshop presents an integrated overview of all these approaches. |
Program | Program outline
Day 1: Tests of neutral trait divergence (WL Chapter 12) Lecture 1: Drift in the mean of quantitative traits Lecture 2: Rate-based and time-series based tests Lecture 3: Qst vs Fst Lecture 4: Orr QTL tests (and their extensions)
Day 2: Tests based on Molecular Data I (WL Chapters 8, 9) Lecture 5: Sweep theory Lecture 6: Genomewide signatures from repeated past selection Lecture 7: Polymorphismbased tests 1: Allele frequency changes and Lewontin-Krakauer tests Lecture 8: Polymorphismbased tests 2: Genome pattern-based tests and SFS tests
Day 3: Tests based on Molecular Data II (WL Chapters 9, 10) Lecture 9: Polymorphism-based tests 3: Haplotypebased tests Lecture 10: Polymorphismbased tests 4: Domestication genes and other examples Lecture 11: Divergencebased tests 1: HKA and MK tests Lecture 12: Divergencebased tests 2: Rate of adaptive substitutions, Poisson random field models
Day 4: Estimating Individual fitness (WL Chapter 29) Lecture 13: Episodes of Selection and the Assignment of Fitness Lecture 14: Variance in Individual Fitness, Bateman gradients
Trait-fitness associations I (WL Chapter 29) Lecture 15: Descriptions of Phenotypic Selection 1: Basics Lecture 16: Descriptions of Phenotypic Selection 2: Fitness surfaces
Day 5: Trait-fitness associations II (WL Chapter 30) Lecture 17: Multivariate selection 1: Basics Lecture 18: Multivariate selection 2: Fitness surfaces Lecture 19: Multivariate selection 3: Elasticities, path analysis, levels of selection Lecture 20: wrap up and conclusions
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Location |
University of Lausanne |
Credits | 2.5 ECTS |
Evaluation | Full attendance and active participation |
Information | When? Where? Questions? |
Expenses | Reimbursement:PhD students of the DPEE are eligible for reimbursement of incurred travel expenses by train (half-fare card, and 2nd class). Please send the original tickets along with the reimbursement form to: Marta Bellone NO reimbursement of your meal expenses Regarding reimbursement of accommodation, please contact the coordinator of the doctoral program (ecologie-evolution(at)cuso.ch) BEFORE the beginning of the course. NO reimbursement of accommodation without the coordinator of the doctoral program agreement prior of the course. |
Registration | The course has been postponed to summer 2021.
Registration Fees:
Free for participants enrolled in the CUSO Ecology & Evolution doctoral program. In case of cancellations, before the deadline: free Other participants: please contact the program coordinator at ecologie-evolution(at)cuso.ch |
Places | 20 |
Deadline for registration |