Detailed information about the course

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Title

Introduction to Bayesian Inference in Practice

Dates

12 - 16 April 2021

Organizer(s)

Prof. Daniele Silvestro, University of Fribourg

Speakers

Prof. Daniele Silvestro, University of Fribourg

Tobias Andermann, University of Gothenburg (SE)

Description

Most researchers in life sciences are exposed in their research to a multitude of methods and algorithms to test hypotheses, infer parameters, explore empirical data sets. Bayesian methods have become standard practice in several fields (e.g., phylogenetic inference, evolutionary biology, genomics), yet understanding how these Bayesian machinery works is not always trivial.

This course is based on the assumption that the easiest way to understand the principles of Bayesian inference and the functioning of the main algorithms is to implement these methods yourself.

The instructors will outline the relevant concepts and basic theory, but the focus of the course will be to learn how to do Bayesian inference in practice. He will show how to implement the most common algorithms to estimate parameters based on posterior probabilities, such as Markov Chain Monte Carlo samplers, and how to build hierarchical models.

He will also discuss hypothesis testing, Bayesian variable selection, and Bayesian applications in machine learning.

Rather than demonstrating existing libraries or software, the course will take a learn-by-doing approach, in which participants will implement their own MCMCs using R or Python (templates for both languages will be provided).

After completion of the course, the participants will have gained a better understanding of how the main Bayesian methods implemented in many programs used in biological research work. Participants will also learn how to model at least basic problems using Bayesian statistics and how to implement the necessary algorithms to solve them.

Participants are expected to have some knowledge of R or Python (each can choose their preferred language), but they will be guided "line-by-line" in writing their scripts. The aim is that, by the end of the week, each participant will have written their own MCMC – from scratch! Participants are encouraged to bring own datasets and questions and we will (try to) figure them out during the course and implement scripts to analyze them in a Bayesian framework.

Program

More information will follow

Location

Online

Evaluation

Full attendance and active participation.

Make sure to sign the attendance list each and every day!

Information

!Requirement!
Basic knowledge of Python or R and Statistics. All participants must bring their personal computer.

When?
12 to 16 April 2021
Lectures will run from 9AM to 1PM each morning, afternoons will be dedicated to exercises that participants will do by themselves with the online support of the teachers

Where?
Online, the zoom link will be forwarded to registered aprticipants in due time

Questions?
Marta Bellone
@: ecologie-evolution@cuso.ch

Expenses

As the course will be held online, no travel cost reimbursement can be claimed

Registration

Register via your MyCUSO account!!

REGISTRATION IS NOW OPEN!

Deadline for registration: 28 March 2021

Priority is given to PhD students of the DPEE until 15 March 2021. After this deadline, first comes, first serves

Registration Fees:

Free for participants enrolled in the CUSO Ecology & Evolution doctoral program

In case of cancellations, before the deadline: free

Late cancellations or no-show: 100 CHF administrative fee

Other participants: please contact the program coordinator at ecologie-evolution(at)cuso.ch

Places

16

Deadline for registration 28.03.2021
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