Detailed information about the course
| Title | NGS genome & transcriptome assembly and analysis |
| Dates | June 16-18, 2014 + June 20 minisymposium BEFRI Genomics Day |
| Responsable de l'activité | Laurent Falquet |
| Organizer(s) | Dr. Laurent Falquet, UNIFR |
| Speakers | Sylvain Pradervand, GTF, UniL |
| Description |
This practical course will detail Next Generation Sequencing methodologies and how to analyse the sequence data to assemble de novo genomes or transcriptomes. The participants will learn how to perform quality control, trimming/filtering, and how to assemble short reads with various available software tools. They will also learn how to compare assemblies and how to annotate rapidly their draft assemblies. The last day is a minisymposium jointly organized by the Universities of Bern and Fribourg.
Prerequisite: UNIX command-line basic knowledge, participants should bring their laptop computer with at least 4Gb RAM and WIFI. See also: edu.isb-sib.ch/course/view.php
|
| Location |
University of Fribourg, Building PER-04 seminar room O.109 and auditorium O.110 (Plant Biology) |
| Map | |
| Information | |
| Expenses | PhD students of StarOmics are eligible for reimbursement of incurred travel expenses by train (half-fare card, and 2nd class). Please send the original tickets (no copies, except for the general abonnement) with the reimbursement form to Corinne Dentan. |
| Places | 25 |
| Deadline for registration | 17.06.2014 |
| Joint activity |
|
short URL
URL onepage